Publications

Connectome-Based Modeling of Mutation-Specific Amyloid-$\beta$ Aggregation in Familial Alzheimer's Disease

Mohammad Alamgir Chowdhury , H. Shaheen

2026-10-07

0 citations

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Predicting Long-Term ADAS-Cog Change From Early Response After Repetitive Transcranial Magnetic Stimulation in Alzheimer Disease

Mohammad Alamgir Chowdhury , H. Shaheen

2026-10-07

0 citations

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A model with exposure in the epidemiological sense. Part 1 -- Base model

C. H. Nkwayep , Julien Arino , P. T. Djomegni

2026-07-16

0 citations

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Antimicrobial Plant Protein Patatin: Identification and In-Silico Analysis Through Phylogenetics and Molecular Docking

Sarah Tariq , Binish Khaliq , H. Shaheen , Ahmad Riaz , Sumaira Rubbani , M. Akash , Amjad Hussain , Muhammad Imran , M. Javed , A. Akrem , Sohaib Mehmood , Sajjad Azam

Agricultural Research 2026-07-11

0 citations

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Near-critical slow dynamics enable flexible temporal computations and generalization

G. Ramesan , Akhilesh P. Nandan , D. Koch , A. Koseska

bioRxiv 2026-07-02

0 citations

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Dynamics of infectious disease spread between transportation hubs and surrounding communities

Rahele Mosleh , Mina Shafadeh , Bushra Majeed , Julien Arino , Abbas Ghasemi , E. Thommes , A. Asgary , H. Hui , Jian-Hong Wu

Infectious Disease Modelling 2026-06-01

0 citations

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Dose-limited interventions in an epidemiological model

Annour Saad Abdramane , H. Djimramadji , M. S. D. Haggar , P. T. Djomegni , Julien Arino

2026-05-17

1 citations

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Within-host immunology to age-of-infection epidemiology via a virtual cohort

Julien Arino , Morgan Craig , Clotilde Djuikem , Kang-Ling Liao , Stéphanie Portet

2026-05-16

0 citations

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Bayesian modelling of amyloid-beta dynamics and astrocyte influence in Alzheimer's disease.

H. Shaheen , R. Melnik

Journal of Neuroscience Methods 2026-05-01

1 citations

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Generalized saddle-node ghosts and their composite structures in dynamical systems

D. Koch , Akhilesh P. Nandan

2026-04-06

2 citations

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Computational modelling of Parkinson's disease: A multiscale approach with deep brain stimulation and stochastic noise.

A. Herrera , M. Chowdhury , H. Shaheen

Journal of Neuroscience Methods 2026-04-01

0 citations

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Missing Data Gap Imputation Methods in Electroencephalogram (EEG) Signals: A Systematic Scoping Review

T. Bergmann , M. Movshovich , Yushu Shao , Julia Ryznar , Xue Nemoga-Stout , I. Marquez , Isuru Herath , A. S. Sainbhi , N. Vakitbilir , Noah Silvaggio , Rakibul Hasan , K. Stein , H. Shaheen , Jaewoong Moon , F. Zeiler

Italian National Conference on Sensors 2026-04-01

0 citations

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Using Floquet theory to unravel far-from equilibrium dynamics in reaction–diffusion systems

V. O. Juma , K. Z. Mapfumo , Stéphanie Portet , Anotida Madzvamuse

PNAS Nexus 2026-03-01

0 citations

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Deterministic and Stochastic Infection Dynamics in a Population Subject to Stress

Clotilde Djuikem , Julien Arino

Bulletin of Mathematical Biology 2026-02-06

1 citations

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Mathematical Modelling Techniques

Harald Krogstad , Mohammed Yiha Dawed , P. T. Tchepmo Djomegni , J. Arino

2026-01-30

0 citations

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Deciphering culprits for cyanobacterial blooms and lake vulnerability in north-temperate lakes

Jacob Serpico , B. A. Zambrano-Luna , Christopher M. Heggerud , A. Hastings , R. Milne , Hao Wang

Ecological Modelling 2026

1 citations

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Spatial control of myosin regulatory light chain phosphorylation modulates cardiac thick filament mechanosensing

Dan Koch

2026-01-01

5 citations

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Within-host immunology to age-of-infection epidemiology via a virtual cohort

Stephanie Portet

2026-01-01

0 citations

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Using Floquet theory to unravel far-from equilibrium dynamics in reaction–diffusion systems

Stephanie Portet

2026-01-01

0 citations

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High Prevalence of Iron Deficiency Anaemia Among Pregnant Women in District Peshawar: A Cross-Sectional Study

H. Shaheen , S. Shah

INTERNATIONAL JOURNAL OF APPLIED AND CLINICAL RESEARCH 2025-12-08

0 citations

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Eight quick tips for data-model integration in ecology

Laurinne J. Balstad , Joe Brennan , M. Baskett , Mattea Berglund , Mei Z Blundell , Jessica A. Bolin , A. A. Briggs , M. C. Fisher , Christopher M. Heggerud , Madeline Jarvis-Cross , L. Mossman , Andrea N. Odell , Jennifer N. Paige , S. Pelletier , M. Provost

PLoS Computational Biology 2025-11-13

0 citations

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A multipartite approach for the self-assembly of DNA graph structures

Simona Bonvicini , M. Ferrari

Natural Computing 2025-10-04

0 citations

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The R-loop grammar predicts R-loop formation under different topological constraints

M. Ferrari , Svetlana Poznanović , Manda Riehl , Jacob Lusk , Stella R. Hartono , Georgina Gonzalez-Isunza , Frédéric Chédin , Mariel Vázquez , Nataša Jonoska

PLoS Comput. Biol. 2025-08-01

2 citations

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On the Superiority of Data-Driven Combined Forecasts Based on Deep Learning Models

Sulalitha Bowala , Md. Erfanul Hoque , H. Shaheen , A. Thavaneswaran , R. Thulasiram , A. Paseka

Annual International Computer Software and Applications Conference 2025-07-08

1 citations

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Dynamics of bovine tuberculosis transmission in mixed herds in Chad.

H. Djimramadji , J. Arino , P. T. Tchepmo Djomegni , Daoussa Haggar

Mathematical Biosciences 2025-07-07

1 citations

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Criticality governs response dynamics and entrainment of periodically forced ghost cycles.

D. Koch , Ulrike Feudel , A. Koseska

Physical Review E 2025-06-10

8 citations

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A metapopulation model for the spread of cholera

Abdramane Saad , J. Arino , P. T. Tchepmo Djomegni , M. D. Daoussa Haggar

2025-05-22

3 citations

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A model for cholera with infectiousness of deceased individuals and vaccination

Annour Saad Abdramane , J. Arino , P. T. Tchepmo Djomegni , M. D. Daoussa Haggar

2025-04-10

2 citations

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Threshold-based impulsive biocontrol for coffee leaf rust

Clotilde Djuikem , Julien Arino

2025-04-01

1 citations

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Adaptive Immunity Determines the Cancer Treatment Outcome of Oncolytic Virus and Anti-PD-1

Kang-Ling Liao , Kenton D. Watt

Bulletin of Mathematical Biology 2025-01-29

3 citations

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Homeorhetic regulation of cellular phenotype

Dan Koch

2025-01-01

3 citations

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Exploring Zika's dynamics: A scoping review journey from epidemic to equations through mathematical modelling

Jhoana P. Romero–Leiton , E. K. E. Laison , Rowin Alfaro , E. Parmley , Julien Arino , K. Acharya , B. Nasri

Infectious Disease Modelling 2024-12-01

9 citations

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Advanced modeling of bioenergetics in the mitochondrial electron transport chain with emphasis on complex IV

M. E. Keleshteri , Chris Cadonic , T. Ghafourian , Ella Thomson , W. Snow , D. McAllister , J. Djordjevic , S. R. Roy Chowdhury , P. Fernyhough , J. Fiege , Stéphanie Portet , B. Albensi

Alzheimer's & Dementia 2024-12-01

1 citations

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Modelling Alzheimer's Protein Dynamics: A Data-Driven Integration of Stochastic Methods, Machine Learning and Connectome Insights

A. Maciver , H. Shaheen

2024-11-04

2 citations

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Long-living transients in ecological models: Recent progress, new challenges, and open questions.

A. Morozov , Ulrike Feudel , A. Hastings , K. C. Abbott , K. Cuddington , Christopher M. Heggerud , Sergei V. Petrovskii

Physics of Life Reviews 2024-11-01

25 citations

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Steady state distributions of moving particles in one dimension: with an eye towards axonal transport

J. Dallon , E. Evans , Christopher P. Grant , Stéphanie Portet

Journal of Mathematical Biology 2024-10-30

0 citations

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Brain Network Dynamics and Multiscale Modeling of Neurodegenerative Disorders: A Review

H. Shaheen , R. Melnik

IEEE Access 2024-10-30

12 citations

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Bayesian approaches for revealing complex neural network dynamics in Parkinson's disease

H. Shaheen , R. Melnik

Journal of Computer Science 2024-10-30

3 citations

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RNA-mediated double-strand break repair by end-joining mechanisms

Youngkyu Jeon , Yi-Lin Lu , M. Ferrari , Tejasvi Channagiri , Penghao Xu , Chance Meers , Yi-Qi Zhang , Sathya Balachander , Vivian S. Park , Stefania Marsili , Z. Pursell , Nataša Jonoska , F. Storici

Nature Communications 2024-09-11

21 citations

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MetaCast: A package for broadCASTing epidemiological and ecological models over META-populations

Martin Grunnill , Julien Arino , Abbas Ghasemi , E. Thommes , Jianhong Wu

Journal of Open Source Software 2024-07-17

2 citations

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Evaluating infectious disease outbreak potential and mitigation effectiveness on cruise ships.

Rahele Mosleh , Mortaza Baky-Haskuee , Abbas Ghasemi , Martin Grunnill , Julien Arino , M. Tofighi , E. Thommes , Jian-Hong Wu

Journal of Theoretical Biology 2024-06-01

9 citations

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Transmission of Multiple Pathogens Across Species.

Clotilde Djuikem , Julien Arino

Bulletin of Mathematical Biology 2024-05-30

3 citations

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Mathematical modeling and analysis of cancer treatment with radiation and anti-PD-L1.

Kang-Ling Liao , Adam J. Wieler , Pedro M. Lopez Gascon

Mathematical Biosciences 2024-05-01

5 citations

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Biological computations: Limitations of attractor-based formalisms and the need for transients.

D. Koch , Akhilesh P. Nandan , G. Ramesan , A. Koseska

Biochemical and Biophysical Research Communications - BBRC 2024-04-16

25 citations

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When and why ecological systems respond to the rate rather than the magnitude of environmental changes

K. C. Abbott , Christopher M. Heggerud , Ying-Cheng Lai , A. Morozov , Sergei V. Petrovskii , K. Cuddington , A. Hastings

Biological Conservation 2024-04-01

35 citations

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Ghost cycles exhibit increased entrainment and richer dynamics in response to external forcing compared to slow-fast systems

D. Koch , A. Koseska

2024-03-28

5 citations

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Abstract 7381: Mathematical modeling and validation of mechanistic target of rapamycin and N-myristoyltransferase signaling pathways in breast cancer

Abinash Meher , Shailly Varma Shrivastav , Anouska Agarwal , Sheen Dube , Stéphanie Portet , A. Shrivastav

Cancer Research 2024-03-22

0 citations

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A model free method of predicting transient dynamics in anaerobic digestion

Christopher M. Heggerud , Alan Hastings

Journal of the Royal Society Interface 2024-03-01

2 citations

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Is SARS-CoV-2 elimination or mitigation best? Regional and disease characteristics determine the recommended strategy

Maria M. Martignoni , Julien Arino , A. Hurford

Royal Society Open Science 2024-02-07

11 citations

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Redefining pandemic preparedness: Multidisciplinary insights from the CERP modelling workshop in infectious diseases, workshop report

Marta C. Nunes , E. Thommes , H. Fröhlich , A. Flahault , Julien Arino , M. Baguelin , M. Biggerstaff , Gaston Bizel-Bizellot , R. Borchering , Giacomo Cacciapaglia , S. Cauchemez , Alex Barbier-Chebbah , Carsten Claussen , C. Choirat , M. Cojocaru , C. Commaille-Chapus , Chi Hon , J. Kong , Nicolas Lambert , K. Lauer , T. Lehr , Cédric Mahé , V. Maréchal , A. Mebarki , S. Moghadas , R. Niehus , L. Opatowski , F. Parino , Géry Pruvost , Andreas Schuppert , R. Thiébaut , Andrea Thomas-Bachli , C. Viboud , Jian-Hong Wu , P. Crépey , L. Coudeville

Infectious Disease Modelling 2024-02-01

23 citations

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Predicting Imminent Cyanobacterial Blooms in Lakes Using Incomplete Timely Data

Christopher M. Heggerud , Jing-Jing Xu , Hao Wang , Mark A. Lewis , Ron W. Zurawell , Charlie J. G. Loewen , R. Vinebrooke , Pouria Ramazi

Water Resources Research 2024-02-01

23 citations

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Neural Dynamics in Parkinson's Disease: Integrating Machine Learning and Stochastic Modelling with Connectomic Data

H. Shaheen , R. Melnik

International Conference on Conceptual Structures 2024

4 citations

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Ghost channels and ghost cycles guiding long transients in dynamical systems

Dan Koch

2024-01-01

53 citations

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Cardiac myosin binding protein-C phosphorylation as a function of multiple protein kinase and phosphatase activities

Dan Koch

2024-01-01

18 citations

GS

Advanced modeling of bioenergetics in the mitochondrial electron transport chain with emphasis on complex IV

Stephanie Portet

2024-01-01

1 citations

GS

Steady state distributions of moving particles in one dimension: with an eye towards axonal transport: JC Dallon et al.

Stephanie Portet

2024-01-01

1 citations

GS

Mathematical modeling and validation of mechanistic target of rapamycin and N-myristoyltransferase signaling pathways in breast cancer

Stephanie Portet

2024-01-01

0 citations

GS

DSBplot: Indels in DNA Double-strand Break Repair Experiments.

Tejasvi Channagiri , M. Ferrari , Youngkyu Jeon , Penghao Xu , F. Storici , Nataša Jonoska

arXiv.org 2023-12-29

0 citations

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IL-27 in combination with anti-PD-1 can be anti-cancer or pro-cancer.

Kang-Ling Liao , Xue-Feng Bai , Avner Friedman

Journal of Theoretical Biology 2023-12-01

6 citations

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Insights into B Cell and Antibody Kinetics Against SARS-CoV-2 Variants Using Mathematical Modelling

S. Farhang-Sardroodi , X. Deng , Stéphanie Portet , Julien Arino , Morgan Craig

bioRxiv 2023-11-12

1 citations

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Mathematical Modelling of the First HIV/ZIKV Co-infection Cases in Colombia and Brazil

Jhoana P. Romero–Leiton , I. Sekkak , Julien Arino , Iain Moyles , Bouchra R. Nasri

Bulletin of Mathematical Biology 2023-09-21

4 citations

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Modelling the transmission of dengue, zika and chikungunya: a scoping review protocol

Jhoana P. Romero–Leiton , K. Acharya , Jane Parmley , Julien Arino , Bouchra R. Nasri

BMJ Open 2023-09-01

10 citations

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Different mechanisms of CD200-CD200R induce diverse outcomes in cancer treatment.

Kang-Ling Liao , Kenton D. Watt , Tom Protin

Mathematical Biosciences 2023-09-01

10 citations

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Astrocytic clearance and fragmentation of toxic proteins in Alzheimer’s disease on large-scale brain networks

H. Shaheen , Swadesh Pal , R. Melnik

Physica A: Statistical Mechanics and its Applications 2023-07-01

12 citations

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Bayesian inference and role of astrocytes in amyloid-beta dynamics with modelling of Alzheimer's disease using clinical data

H. Shaheen , R. Melnik , T. Initiative

2023-06-21

5 citations

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Data-driven Stochastic Model for Quantifying the Interplay Between Amyloid-beta and Calcium Levels in Alzheimer’s Disease

H. Shaheen , R. Melnik , Sundeep Singh , Alzheimer's Disease Neuroimaging Initiative

Statistical analysis and data mining 2023-06-17

13 citations

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Importation models for travel-related SARS-CoV-2 cases reported in Newfoundland and Labrador during the COVID-19 pandemic

Zainab Mohammadi , M. Cojocaru , Julien Arino , A. Hurford

medRxiv 2023-06-12

5 citations

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Betti Numbers of Prodsimplicial Complexes for Directed Graphs with Applications to Word Reductions

L. G'omez , M. Ferrari , Natavsa Jonoska , M. Saito

2023-05-10

0 citations

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Fluctuation of growth and photosynthetic characteristics in Prorocentrum shikokuense under phosphorus limitation: Evidence from field and laboratory

A. Shen , Shu-Fei Gao , Christopher M. Heggerud , Hao Wang , Zengling Ma , Sanling Yuan

Ecological Modelling 2023-05-01

10 citations

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SARS-CoV-2 in Nursing Homes: Analysis of Routine Surveillance Data in Four European Countries

T. Delory , Julien Arino , Paul-Émile Haÿ , Vincent Klotz , P. Böelle

Aging and Disease 2023-04-01

2 citations

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Modelling disease mitigation at mass gatherings: A case study of COVID-19 at the 2022 FIFA World Cup

Martin Grunnill , Julien Arino , Zachary McCarthy , N. Bragazzi , L. Coudeville , E. Thommes , A. Amiche , Abbas Ghasemi , L. Bourouiba , M. Tofighi , A. Asgary , Mortaza Baky-Haskuee , Jian-Hong Wu

medRxiv 2023-03-29

10 citations

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A model for the early COVID-19 outbreak in China with case detection and behavioural change

Julien Arino , khalid el hail , M. Khaladi , A. Ouhinou

Biomath 2023-01-27

4 citations

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A simple in-host model for COVID-19 with treatments: model prediction and calibration

Isam Al-Darabsah , Kang-Ling Liao , Stéphanie Portet

Journal of Mathematical Biology 2023-01-10

17 citations

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Beyond fixed points: transient quasi-stable dynamics emerging from ghost channels and ghost cycles

D. Koch , A. Nandan , G. Ramesan , A. Koseska

2023

2 citations

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Beyond Translation: An Overview of Best Practices for Evidence-Informed Decision Making for Public Health Practice

Julien Arino

2023-01-01

0 citations

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Investigating air travel network changes in Canada, USA and Europe during COVID-19 using open source data

Julien Arino

2023-01-01

0 citations

GS

Interplay between amyloid-beta and calcium dynamics in Alzheimer’s disease: A physics-informed Bayesian approach

Hinah Shaheen

2023-01-01

0 citations

GS

Phospholamban pentamerization increases sensitivity and dynamic range of cardiac relaxation

Dan Koch

2023-01-01

36 citations

GS

Obscurin Rho GEF domains are phosphorylated by MST-family kinases but do not exhibit nucleotide exchange factor activity towards Rho GTPases in vitro

Dan Koch

2023-01-01

8 citations

GS

The cardiac myosin binding protein-C phosphorylation state as a function of multiple protein kinase and phosphatase activities

Dan Koch

2023-01-01

1 citations

GS

Niche differentiation in the light spectrum promotes coexistence of phytoplankton species: a spatial modelling approach: CM Heggerud et al.

Chris Heggerud

2023-01-01

12 citations

GS

A simple in-host model for COVID-19 with treatments: model prediction and calibration

Stephanie Portet

2023-01-01

17 citations

GS

Models of Vimentin Organization Under Actin-Driven Transport

Stephanie Portet

2023-01-01

2 citations

GS

Combination therapy for cancer with IL-27 and anti-PD-1: A simplified mathematical model

Kenton D. Watt , Kang-Ling Liao

Mathematics in Applied Sciences and Engineering 2022-12-09

1 citations

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RNA-mediated double-strand break repair in human cells

Youngkyu Jeon , M. Ferrari , Tejasvi Channagiri , Penghao Xu , Sathya Balachander , Vivian S. Park , Stefania Marsili , Z. Pursell , Nataša Jonoska , F. Storici

bioRxiv 2022-11-01

0 citations

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Multiscale co-simulation of deep brain stimulation with brain networks in neurodegenerative disorders

H. Shaheen , Swadesh Pal , R. Melnik

Brain Multiphysics 2022-11-01

15 citations

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G protein controls stress readiness by modulating transcriptional and metabolic homeostasis in Arabidopsis thaliana and Marchantia polymorpha.

Ting-Ying Wu , Shalini Krishnamoorthi , Kulaporn Boonyaves , Isam Al-Darabsah , Richalynn Leong , Alan M. Jones , K. Ishizaki , Kang-Ling Liao , D. Urano

Molecular Plant 2022-10-31

19 citations

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On non-isomorphic biminimal pots realizing the cube

M. Ferrari , A. Pasotti , T. Traetta

2022-10-27

3 citations

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Effect of Movement on the Early Phase of an Epidemic

Julien Arino , E. Milliken

Bulletin of Mathematical Biology 2022-09-23

4 citations

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Assessing transmission risks and control strategy for monkeypox as an emerging zoonosis in a metropolitan area

Pei Yuan , Yi Tan , Liu Yang , E. Aruffo , N. Ogden , J. Bélair , J. Heffernan , Julien Arino , James Watmough , H. Carabin , Huai-Ping Zhu

Journal of Medical Virology 2022-09-11

64 citations

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Models of vimentin organization under actin-driven transport.

Youngmin Park , C. Leduc , S. Etienne-Manneville , Stéphanie Portet

Physical Review E 2022-09-06

2 citations

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Mathematical modeling for the combination treatment of IFN- γ and anti-PD-1 in cancer immunotherapy.

Kang-Ling Liao , Kenton D. Watt

Mathematical Biosciences 2022-09-01

17 citations

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Using Fluorescence Recovery After Photobleaching data to uncover filament dynamics

J. Dallon , C. Leduc , C. P. Grant , Emily J. Evans , S. Etienne-Manneville , Stéphanie Portet

PLoS Comput. Biol. 2022-09-01

7 citations

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Modeling vaccination and control strategies for outbreaks of monkeypox at gatherings

Pei Yuan , Yi Tan , Liu Yang , E. Aruffo , N. Ogden , J. Bélair , Julien Arino , J. Heffernan , James Watmough , H. Carabin , H. Zhu

Frontiers in Public Health 2022-08-16

40 citations

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Pandemic modelling for regions implementing an elimination strategy

A. Hurford , Maria M. Martignoni , J. C. Loredo-Osti , Francis Anokye , Julien Arino , B. Husain , B. Gaas , J. Watmough

medRxiv 2022-07-18

24 citations

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Mathematical modelling of vaccination rollout and NPIs lifting on COVID-19 transmission with VOC: a case study in Toronto, Canada

E. Aruffo , Pei Yuan , Yi Tan , E. Gatov , I. Moyles , J. Bélair , James Watmough , S. Collier , Julien Arino , H. Zhu

BMC Public Health 2022-07-15

32 citations

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Mathematical Modeling and Analysis of CD200–CD200R in Cancer Treatment

Kang-Ling Liao , Kenton D. Watt

Bulletin of Mathematical Biology 2022-07-06

4 citations

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The Influence of Knowledge Management Capacities on Pharmaceutical Firms Competitive Advantage: The Mediating Role of Supply Chain Agility and Moderating Role of Inter Functional Integration

Zhi-Hua Hu , M. Sarfraz , K. Khawaja , H. Shaheen , Shahida Mariam

Frontiers in Public Health 2022-07-05

23 citations

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Impacts of a changing environment on a stoichiometric producer-grazer system: a stochastic modelling approach

Velizar Kirkow , Hao Wang , Pablo Venegas Garcia , Shohel Ahmed , Christopher M. Heggerud

Ecological Modelling 2022-07-01

9 citations

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Dual-wavelength stopped-flow analysis of the lateral and longitudinal assembly kinetics of vimentin

Lovis Schween , Norbert Mücke , Stéphanie Portet , W. H. Goldmann , H. Herrmann , B. Fabry

bioRxiv 2022-06-09

11 citations

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Bistability in deterministic and stochastic SLIAR-type models with imperfect and waning vaccine protection

Julien Arino , E. Milliken

Journal of Mathematical Biology 2022-06-01

21 citations

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Impact of noise on the regulation of intracellular transport of intermediate filaments.

Stéphanie Portet , S. Etienne-Manneville , C. Leduc , J. Dallon

Journal of Theoretical Biology 2022-06-01

11 citations

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Efficacy of a “stay-at-home” policy on SARS-CoV-2 transmission in Toronto, Canada: a mathematical modelling study

Pei Yuan , Juan Li , E. Aruffo , E. Gatov , Qi Li , Ting-Ting Zheng , N. Ogden , B. Sander , Jane Heffernan , S. Collier , Yi Tan , Jun Li , Julien Arino , J. Bélair , James Watmough , J. Kong , I. Moyles , Huai-Ping Zhu

CMAJ Open 2022-04-01

26 citations

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Mathematical comparison and empirical review of the Monod and Droop forms for resource-based population dynamics

Hao Wang , Pablo Venegas Garcia , Shohel Ahmed , Christopher M. Heggerud

Ecological Modelling 2022-04-01

31 citations

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Disease transmission and mass gatherings: a case study on meningococcal infection during Hajj

L. Coudeville , A. Amiche , Ashrafur Rahman , Julien Arino , Biao Tang , Ombeline Jollivet , A. Doğu , E. Thommes , Jianhong Wu

BMC Infectious Diseases 2022-03-22

24 citations

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A general mathematical model for the in vitro assembly dynamics of intermediate filament proteins.

Norbert Mücke , T. Wocjan , Marine Jacquier , H. Herrmann , Stéphanie Portet

Biophysical Journal 2022-02-01

8 citations

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Estimating social contacts in mass gatherings for disease outbreak prevention and management: case of Hajj pilgrimage

M. Tofighi , A. Asgary , Ghassem Tofighi , M. Najafabadi , Julien Arino , A. Amiche , Ashrafur Rahman , Zachary McCarthy , Nicola Luigi Bragazzi , E. Thommes , L. Coudeville , Martin Grunnill , L. Bourouiba , Jian-Hong Wu

Tropical Diseases, Travel Medicine and Vaccines 2022-01-17

7 citations

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The Influence of Amyloid-Beta on Calcium Dynamics in Alzheimer's Disease: A Spatio-Temporal Study

Swadesh Pal , H. Shaheen , R. Melnik

Communication Systems and Applications 2022

7 citations

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Estimating Social Contacts in Mass Gatherings Through Agent-Based Simulation Modeling: Case of Hajj Pilgrimage

Julien Arino

2022-01-01

22 citations

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Evaluating the Risk of Reopening the Border: A Case Study of Ontario (Canada) to New York (USA) Using Mathematical Modeling

Julien Arino

2022-01-01

2 citations

GS

A mathematical analysis of an activator-inhibitor Rho GTPase model

Stephanie Portet

2022-01-01

12 citations

GS

Dual-wavelength stopped-flow analysis of the lateral and longitudinal assembly kinetics of vimentin

Stephanie Portet

2022-01-01

11 citations

GS

Impact of noise on the regulation of intracellular transport of intermediate filaments

Stephanie Portet

2022-01-01

11 citations

GS

A general mathematical model for the in vitro assembly dynamics of intermediate filament proteins

Stephanie Portet

2022-01-01

8 citations

GS

Using Fluorescence Recovery After Photobleaching data to uncover filament dynamics

Stephanie Portet

2022-01-01

7 citations

GS

Deep Brain Stimulation with a Computational Model for the Cortex-Thalamus-Basal-Ganglia System and Network Dynamics of Neurological Disorders

H. Shaheen , R. Melnik

Comput. Math. Methods 2021-12-06

22 citations

DOI PDF S2 GS

A Neuron-Glial Model of Exosomal Release in the Onset and Progression of Alzheimer's Disease

H. Shaheen , Sundeep Singh , R. Melnik

Frontiers in Computational Neuroscience 2021-09-20

23 citations

DOI PDF S2 GS

Mathematical modeling of the eyespots in butterfly wings.

Kang-Ling Liao , Wei Chang , Jeffrey M. Marcus , Jenn-Nan Wang

Journal of Theoretical Biology 2021-09-08

0 citations

DOI PDF S2

Niche differentiation in the light spectrum promotes coexistence of phytoplankton species: a spatial modelling approach

Christopher M. Heggerud , King-Yeung Lam , Hao Wang

Journal of Mathematical Biology 2021-09-06

9 citations

DOI PDF S2

Mathematical modeling and analysis of the heat shock protein response during thermal stress in fish and HeLa cells.

Annette Dumas , Kang-Ling Liao , K. Jeffries

Mathematical Biosciences 2021-09-01

7 citations

DOI PDF S2

Coupling the socio-economic and ecological dynamics of cyanobacteria: Single lake and network dynamics

Christopher M. Heggerud , Hao Wang , M. Lewis

Ecological Economics 2021-08-13

15 citations

DOI PDF S2 GS

Risk of COVID-19 variant importation – How useful are travel control measures?

Julien Arino , Pierre-Yves Bo , E. Milliken

Infectious Disease Modelling 2021-07-11

17 citations

DOI PDF S2 GS

The origins and potential future of SARS-CoV-2 variants of concern in the evolving COVID-19 pandemic

S. Otto , T. Day , Julien Arino , C. Colijn , J. Dushoff , Michael W. Z. Li , S. Mechai , G. Van Domselaar , Jian-Hong Wu , D. Earn , N. Ogden

Current Biology 2021-06-23

446 citations

DOI PDF S2 GS

Describing, Modelling and Forecasting the Spatial and Temporal Spread of COVID-19: A Short Review

Julien Arino

Mathematics of Public Health 2021-02-04

29 citations

DOI PDF S2 GS

Stoichiometric Ecotoxicology for a Multisubstance World

A. Peace , P. C. Frost , Nicole D. Wagner , M. Danger , Chiara Accolla , P. Antczak , B. Brooks , David M. Costello , R. Everett , Kevin B. Flores , Christopher M. Heggerud , Roxanne Karimi , Yun Kang , Y. Kuang , James H. Larson , T. Mathews , G. Mayer , J. Murdock , C. Murphy , R. Nisbet , L. Pecquerie , N. Pollesch , E. Rutter , K. Schulz , J. Scott , L. Stevenson , Hao Wang

BioScience 2021-01-20

24 citations

DOI PDF S2 GS

Mathematical modelling of OAS2 activation by dsRNA and effects of dsRNA lengths

Deokro Lee , Amit Koul , Nikhat Lubna , Sean A. McKenna , Stéphanie Portet

2021

2 citations

DOI PDF S2 GS

A mathematical analysis of an activator-inhibitor Rho GTPase model

V. O. Juma , L. Dehmelt , Stéphanie Portet , A. Madzvamuse

Journal of Computational Dynamics 2021

8 citations

DOI PDF S2 GS

A Study on Use of Collocation in Business Class Learners Un estudio sobre el uso de combinaciones de palabras en estudiantes de administración

N. Suleman , S. Deepa , Hussain Othman , Ali Ahmed , Muhammad Zahid Abbas , M. Nawaz , Uzma Nazar , H. Shaheen

2021

5 citations

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Analysis of Cortical Spreading Depression in Brain with Multiscale Mathematical Models

H. Shaheen , R. Melnik , Sundeep Singh

Springer Proceedings in Mathematics & statistics 2021

3 citations

DOI PDF S2 GS

Mathematical modeling of calcium-mediated exosomal dynamics in neural cells

Hinah Shaheen

2021-01-01

3 citations

GS

Recent Developments in Mathematical, Statistical and Computational Sciences: The V AMMCS International Conference, Waterloo, Canada, August 18–23, 2019

Hinah Shaheen

2021-01-01

0 citations

GS

When is an obscurin variant pathogenic? The impact of Arg4344Gln and Arg4444Trp variants on protein–protein interactions and protein stability

Dan Koch

2021-01-01

29 citations

GS

Molecular noise filtering in the β-adrenergic signaling network by phospholamban pentamers

Dan Koch

2021-01-01

12 citations

GS

Modelling phytoplankton across many scales: transient dynamics, human interactions, and niche differentiation in the light spectrum

Chris Heggerud

2021-01-01

0 citations

GS

Mathematical modelling of OAS2 activation by dsRNA and effects of dsRNA lengths

Stephanie Portet

2021-01-01

1 citations

GS

Secondary Structure Ensemble Analysis via Community Detection

H. Du , M. Ferrari , Christine E. Heitsch , Forrest Hurley , C. Mennicke , Blair D. Sullivan , Bin Xu

Association for Women in Mathematics Series 2020-12-30

0 citations

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Study On the Use of Collocations in Business Class Learners

N. Suleman , Sadia Deep , Hussain Othman , Ali Ahmed , Muhammad Zahid Abbas , M. Nawaz , Uzma Nazar , H. Shaheen

Colombian Applied Linguistics Journal 2020-12-22

0 citations

DOI PDF S2

Spread of Dutch elm disease in an urban forest

N. Bajeux , Julien Arino , Stéphanie Portet , R. Westwood

2020-12-15

18 citations

DOI PDF S2 GS

Quarantine and the risk of COVID-19 importation

J. Arino , N. Bajeux , Stéphanie Portet , James Watmough

Epidemiology and Infection 2020-12-09

26 citations

DOI PDF S2 GS

Optogenetic Tuning Reveals Rho Amplification-Dependent Dynamics of a Cell Contraction Signal Network

Dominic Kamps , J. Koch , V. O. Juma , Eduard Campillo-Funollet , Melanie Graessl , Soumya Banerjee , T. Mazel , Xi Chen , Yao-Wen Wu , Stéphanie Portet , A. Madzvamuse , Perihan Nalbant , L. Dehmelt

Cell Reports 2020-12-01

67 citations

DOI PDF S2 GS

The Problem-Based Learning Approach towards Developing Soft Skills: A Systematic Review

Sadia Deep , Ali Ahmed , N. Suleman , Muhammad Zahid Abbas , Uzma Naza , H. Shaheen , Abdul Razzaq

2020-11-18

42 citations

DOI PDF S2

Efficacy of stay-at-home policy and transmission of COVID-19 in Toronto, Canada: a mathematical modeling study

Pei Yuan , Juan Li , E. Aruffo , Qi Li , Ting-Ting Zheng , N. Ogden , B. Sander , Jane Heffernan , E. Gatov , E. Gournis , Sarah Collier , Yi Tan , Jun Li , Julien Arino , J. Bélair , James Watmough , J. Kong , I. Moyles , Huai-Ping Zhu

medRxiv 2020-10-21

11 citations

DOI PDF S2

Assessing the risk of COVID-19 importation and the effect of quarantine

J. Arino , N. Bajeux , Stéphanie Portet , James Watmough

medRxiv 2020-08-14

5 citations

DOI PDF S2

Quantifying the annual incidence and underestimation of seasonal influenza: A modelling approach

Zachary McCarthy , S. Athar , M. Alavinejad , Christopher Chow , I. Moyles , K. Nah , J. Kong , N. Agrawal , Ahmed Jaber , L. Keane , Sam Liu , M. Nahirniak , Danielle St Jean , R. Romanescu , Jessica E. Stockdale , Bruce Seet , L. Coudeville , E. Thommes , A. Taurel , Jason Lee , Thomas Shin , Julien Arino , J. Heffernan , A. Chit , Jianhong Wu

Theoretical Biology and Medical Modelling 2020-07-10

28 citations

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Scénarios de modélisation de l’épidémie de COVID-19 au Canada

Nicholas H. Ogden , A. Fazil , Julien Arino , Philippe Berthiaume , David N. Fisman , A. L. Greer , A. Ludwig , Victoria Ng , Ashleigh R. Tuite , P. Turgeon , Lisa A. Waddell , Jianhong Wu

2020-06-04

2 citations

DOI PDF S2

Modelling scenarios of the epidemic of COVID-19 in Canada.

N. Ogden , A. Fazil , Julien Arino , Philippe Berthiaume , D. Fisman , A. Greer , A. Ludwig , V. Ng , A. Tuite , P. Turgeon , L. Waddell , Jian-Hong Wu

Canada communicable disease report = Releve des maladies transmissibles au Canada 2020-06-04

86 citations

DOI PDF S2 GS

Transient Dynamics of a Stoichiometric Cyanobacteria Model via Multiple-Scale Analysis

Christopher M. Heggerud , Hao Wang , M. Lewis

SIAM Journal on Applied Mathematics 2020-05-19

36 citations

DOI PDF S2 GS

A simple model for COVID-19

Julien Arino , Stéphanie Portet

Infectious Disease Modelling 2020-04-28

194 citations

DOI PDF S2 GS

On the minimum number of bond-edge types and tile types: An approach by edge-colorings of graphs

S. Bonvicini , M. Ferrari

Discrete Applied Mathematics 2020-04-01

45 citations

DOI PDF S2

Mathematical epidemiology in a data-rich world

Julien Arino

Infectious Disease Modelling 2020-01-07

19 citations

DOI PDF S2 GS

A primer on model selection using the Akaike Information Criterion

Stéphanie Portet

Infectious Disease Modelling 2020-01-07

537 citations

DOI PDF S2 GS

EFFECT OF MEDIA-INDUCED MODIFICATION OF TRAVEL RATES ON DISEASE TRANSMISSION IN A MULTIPLE PATCH SETTING

Wei Yang , C. Sun , Julien Arino

2020

4 citations

DOI PDF S2 GS

Disease transmission and mass gatherings : a case study on meningococcal infection during Hajj Supplementary Text 1

L. Coudeville , A. Amiche , Ashrafur Rahman , Julien Arino , Biao Tang , Ombeline Jollivet , A. Doğu , E. Thommes , Jianhong , Wu

2020

0 citations

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Investigation of global and local COVID-19 importation risks

Julien Arino

2020-01-01

6 citations

GS

Review of "Dynamical System Models in the Life Sciences and Their Underlying Scientific Issues"

Julien Arino

2020-01-01

0 citations

GS

Homo-Oligomerisation in Signal Transduction: Dynamics, Homeostasis, Ultrasensitivity, Bistability

Dan Koch

2020-01-01

7 citations

GS

A primer on model selection using the Akaike Information Criterion

Stephanie Portet

2020-01-01

722 citations

GS

Optogenetic tuning reveals rho amplification-dependent dynamics of a cell contraction signal network

Stephanie Portet

2020-01-01

67 citations

GS

Quarantine and the risk of COVID-19 importation

Stephanie Portet

2020-01-01

26 citations

GS

Infectious Disease Modelling

Stephanie Portet

2020-01-01

0 citations

GS

Current Trends in Mathematical Epidemiology

Julien Arino , James Watmough

Bulletin of Mathematical Biology 2019-11-01

4 citations

DOI PDF S2 GS

Development of a Biomechanical Model to Study the Effects of Lifting Load on Sciatic Pain

Shehla Inam , Zainab Ali , H. Wahab , H. Shaheen , Faisal Amin , Muhammad Zia ur Rehman , Hamza Ghazanfar Toor , M. Shafique

Journal of Physics, Conference Series 2019-11-01

1 citations

DOI PDF S2

Decomposition of some Hankel matrices generated by the generalized rencontres polynomials

M. Ferrari , E. Munarini

Linear Algebra and its Applications 2019-04-15

6 citations

DOI PDF S2

Deciphering the transport of elastic filaments by antagonistic motor proteins.

Stéphanie Portet , C. Leduc , S. Etienne-Manneville , J. Dallon

Physical Review E 2019-04-01

11 citations

DOI PDF S2 GS

Number of Source Patches Required for Population Persistence in a Source–Sink Metapopulation with Explicit Movement

Julien Arino , N. Bajeux , Steve Kirkland

Bulletin of Mathematical Biology 2019-03-07

47 citations

DOI PDF S2 GS

Stochastic modeling reveals how motor protein and filament properties affect intermediate filament transport.

J. Dallon , C. Leduc , S. Etienne-Manneville , Stéphanie Portet

Journal of Theoretical Biology 2019-03-01

25 citations

DOI PDF S2 GS

Mathematical Models for Describing Molecular Self-assembly

M. Ferrari

2019

0 citations

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Analysis and simulations of coupled-bulk-surface PDES with applications to Biology Organisers :

A. Madzvamuse , D. Cusseddu , L. Edelstein-Keshet , J. Mackenzie , Stéphanie Portet , A. Madzvamuse , M. Möller , L. Wittwer , M. Multerer , D. Iber , S. Aland

2019

0 citations

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A coupled bulk-surface model for cell polarisation

Stephanie Portet

2019-01-01

90 citations

GS

Stochastic modeling reveals how motor protein and filament properties affect intermediate filament transport

Stephanie Portet

2019-01-01

25 citations

GS

Deciphering the transport of elastic filaments by antagonistic motor proteins

Stephanie Portet

2019-01-01

11 citations

GS

The snapback repellers for chaos in multi-dimensional maps

Kang-Ling Liao , Chih-Wen Shih , Chi-Jer Yu

2018-11-30

4 citations

DOI PDF S2

Insertions Yielding Equivalent Double Occurrence Words

Daniel A. Cruz , M. Ferrari , Nataša Jonoska , Lukas Nabergall , M. Saito

Fundamenta Informaticae 2018-11-28

3 citations

DOI PDF S2

Transformations on Double Occurrence Words Motivated by DNA Rearrangement

Daniel A. Cruz , M. Ferrari , Nataša Jonoska , Lukas Nabergall , M. Saito

arXiv.org 2018-11-28

0 citations

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A coupled bulk-surface model for cell polarisation.

D. Cusseddu , L. Edelstein-Keshet , J. Mackenzie , Stéphanie Portet , A. Madzvamuse

Journal of Theoretical Biology 2018-09-12

90 citations

DOI PDF S2 GS

Investigation of Novel Regulation of N-myristoyltransferase by Mammalian Target of Rapamycin in Breast Cancer Cells

Marine Jacquier , S. Kuriakose , Apurva Bhardwaj , Yang Zhang , A. Shrivastav , Stéphanie Portet , Shailly Varma Shrivastav

Scientific Reports 2018-08-28

20 citations

DOI PDF S2 GS

Cyclic compositions and cycles of the hypercube

M. Ferrari , N. Z. Salvi

2018-04-24

2 citations

DOI PDF S2

Long‐distance communication in Arabidopsis involving a self‐activating G protein

Meral Tunc-Ozdemir , Kang-Ling Liao , Timothy J. Ross-Elliott , T. Elston , Alan M. Jones

Plant Direct 2018-02-01

6 citations

DOI PDF S2

Design formalism for DNA self-assembly of polyhedral skeletons using rigid tiles

M. Ferrari , A. Cook , Alana Houlihan , R. Rouleau , N. Seeman , Greta Pangborn , J. Ellis-Monaghan

Journal of Mathematical Chemistry 2018-01-31

45 citations

DOI PDF S2

A Generalization of the 'Problème des Rencontres'

Stefano Capparelli , M. Ferrari , Emanuele Munarini , N. Z. Salvi

Journal of Integer Sequences 2018

13 citations

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Headmade. The transformation of the wood manufacturing

M. Ferrari

2018

0 citations

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Structure of the tandem PX-PH domains of Bem3 from Saccharomyces cerevisiae

Dan Koch

2018-01-01

7 citations

GS

Combining causal Bayes nets and cellular automata: A hybrid modelling approach to mechanisms

Dan Koch

2018-01-01

6 citations

GS

Investigation of novel regulation of N-myristoyltransferase by mammalian target of rapamycin in breast cancer cells

Stephanie Portet

2018-01-01

20 citations

GS

Dose-Duration Reciprocity for G protein activation: Modulation of kinase to substrate ratio alters cell signaling

Kang-Ling Liao , Charles E. Melvin , R. Sozzani , Roger D. Jones , T. Elston , Alan M. Jones

PLoS ONE 2017-12-29

8 citations

DOI PDF S2

The kinetics in mathematical models on segmentation clock genes in zebrafish

Kuan-Wei Chen , Kang-Ling Liao , Chih-Wen Shih

Journal of Mathematical Biology 2017-05-25

9 citations

DOI PDF S2

Spatio-temporal spread of infectious pathogens of humans

Julien Arino

Infectious Disease Modelling 2017-05-01

46 citations

DOI PDF S2 GS

A nondestructive method to estimate the chlorophyll content of Arabidopsis seedlings

Ying Liang , D. Urano , Kang-Ling Liao , T. Hedrick , Ya-Jun Gao , Alan M. Jones

Plant Methods 2017-04-14

138 citations

DOI PDF S2

Minimal edge colorings of class 2 graphs and double graphs

M. Ferrari , N. Zagaglia

2017-02-16

0 citations

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Intermediate filament dynamics: Disassembly regulation

C. Sun , Julien Arino , Stéphanie Portet

2017

7 citations

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Combinatorial interpretations and enumeration of particular bijections

F. Beggas , M. Ferrari , N. Z. Salvi

2017

6 citations

PDF S2

Aperiodic Compositions and Classical Integer Sequences

M. Ferrari , N. Z. Salvi

Journal of Integer Sequences 2017

3 citations

PDF S2

Recent results on the adjacent vertex distinguishing chromatic index of the direct product of graphs

M. Ferrari , N. Zagaglia

2017

0 citations

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MOESM12 of A nondestructive method to estimate the chlorophyll content of Arabidopsis seedlings

Ying Liang , D. Urano , Kang-Ling Liao , H. Tyson , Ya-Jun Gao , J. Alan

2017

1 citations

DOI PDF S2

World's largest Science, Technology & Medicine Open Access book publisher

Kang-Ling Liao , Chih-Wen Shih , Jui-Pin Tseng

2017

0 citations

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A causal Bayesian network model of disease progression mechanisms in chronic myeloid leukemia

Dan Koch

2017-01-01

33 citations

GS

A Shadow Detector for Photosynthesis Efficiency

Kang-Ling Liao , Roger D. Jones , Patrick C. McCarter , Meral Tunc-Ozdemir , J. A. Draper , T. Elston , D. Kramer , Alan M. Jones

Journal of Theoretical Biology 2016-12-03

19 citations

DOI PDF S2

Toward Standardizing a Lexicon of Infectious Disease Modeling Terms

Rachael M. Milwid , A. Steriu , Julien Arino , J. Heffernan , A. Hyder , D. Schanzer , E. Gardner , M. Haworth-Brockman , Harpa Isfeld-Kiely , J. Langley , S. Moghadas

Frontiers in Public Health 2016-09-28

39 citations

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ON CIRCULAR DISARRANGED STRINGS OF SEQUENCES

F. Beggas , M. Ferrari , H. Kheddouci , N. Z. Salvi

2016-09-21

0 citations

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Revisiting a two-patch SIS model with infection during transport.

Julien Arino , C. Sun , Wei Yang

Mathematical medicine and biology : a journal of the IMA 2016-03-01

24 citations

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Stratégies pour l ’ utilisation de l ’ oseltamivir et du zanamivir durant les éclosions pandémiques

E. Hansen , Troy Day , Julien Arino , Jianhong Wu , Seyed M. Moghadas

2016

0 citations

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Digital communication platform between man and machine

M. Ferrari

2016

0 citations

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IMPACT OF INTROVERSION/EXTROVERSION PERSONALITY TYPES IN ESL PROFIECIENCY IN WRITING SKILL AT MASTER LEVEL

Muhammad Tariq Ayub , H. Shaheen , Sumera Saleem

2016

0 citations

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A pull-down procedure for the identification of unknown GEFs for small GTPases

Dan Koch

2016-01-01

26 citations

GS

Local stability analysis of ratio-dependent predator-prey models with predator harvesting rates

Christopher M. Heggerud , Kun-Quan Lan

Applied Mathematics and Computation 2015-11-01

41 citations

DOI PDF S2 GS

The role of the cytokines IL-27 and IL-35 in cancer.

A. Friedman , Kang-Ling Liao

Mathematical biosciences and engineering : MBE 2015-08-01

25 citations

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A model for the spread of tuberculosis with drug-sensitive and emerging multidrug-resistant and extensively drug resistant strains

Julien Arino , I. A. Soliman

2015-05-08

15 citations

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Keratin Dynamics: Modeling the Interplay between Turnover and Transport

Stéphanie Portet , A. Madzvamuse , A. Chung , R. Leube , R. Windoffer

PLoS ONE 2015-03-30

23 citations

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Using Mathematical Modeling to Integrate Disease Surveillance and Global Air Transportation Data

Julien Arino , K. Khan

2015-01-30

9 citations

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Critical Discourse Analysis of Political TV Talk Show of Pakistani Media

Sumaira Saleem , S. Hussain , A. Shahzad , H. Shaheen

2015-01-26

2 citations

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Epidemiological implications of mobility between a large urban centre and smaller satellite cities

Julien Arino , Stéphanie Portet

Journal of Mathematical Biology 2015-01-14

50 citations

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Locking GTPases covalently in their functional states

Dan Koch

2015-01-01

32 citations

GS

It’s Not (Only) The Joke’s Fault: A Speech Act Approach To Offensive Humor

Dan Koch

2015-01-01

6 citations

GS

Keratin dynamics: modeling the interplay between turnover and transport

Stephanie Portet

2015-01-01

23 citations

GS

A mathematical model for the keratin cycle of assembly and disassembly

Stephanie Portet

2015-01-01

9 citations

GS

Studying the Cytoskeleton: Case of Intermediate Filaments

Stephanie Portet

2015-01-01

2 citations

GS

Mathematical Modeling of Interleukin-35 Promoting Tumor Growth and Angiogenesis

Kang-Ling Liao , Xue-Feng Bai , A. Friedman

PLoS ONE 2014-10-30

48 citations

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The PRCC and p-value of parameters for sensitivity analysis.

Kang-Ling Liao , Xue-Feng Bai , Friedman Avner

2014-10-30

0 citations

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Mathematical Modeling of Interleukin-27 Induction of Anti-Tumor T Cells Response

Kang-Ling Liao , Xue-Feng Bai , A. Friedman

PLoS ONE 2014-03-14

60 citations

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The Effect of Time Delay in a Two-Patch Model with Random Dispersal

Kang-Ling Liao , Y. Lou

Bulletin of Mathematical Biology 2014-02-01

23 citations

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Dynamics of in vitro intermediate filament length distributions.

Stéphanie Portet

Journal of Theoretical Biology 2013-09-07

22 citations

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The role of CD200-CD200R in tumor immune evasion.

Kang-Ling Liao , Xue-Feng Bai , A. Friedman

Journal of Theoretical Biology 2013-07-07

39 citations

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Entry and exit screening of airline travellers during the A(H1N1) 2009 pandemic: a retrospective evaluation.

K. Khan , R. Eckhardt , J. Brownstein , R. Naqvi , Wei Hu , David Kossowsky , D. Scales , Julien Arino , Michael Macdonald , Jun Wang , J. Sears , M. Cetron

Bulletin of the World Health Organization 2013-03-27

75 citations

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Quelques notions d'épidémiologie mathématique

Julien Arino

2013

0 citations

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Impact of viral mutation on suppression of infection by cytotoxic T lymphocytes

Julien Arino , N. Madras , Stéphanie Portet , B. Sahai

2013

0 citations

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Dynamics of in vitro intermediate filament length distributions

Stephanie Portet

2013-01-01

22 citations

GS

Assemblage in vitro des filaments intermédiaires dans "Le vivant discret et continu - modes de représentation en biologie théorique"

Stephanie Portet

2013-01-01

0 citations

GS

A LATTICE MODEL ON SOMITOGENESIS OF ZEBRAFISH

Kang-Ling Liao , Chih-Wen Shih

2012-07-01

4 citations

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Synchronized oscillations in a mathematical model of segmentation in zebrafish

Kang-Ling Liao , Chih-Wen Shih , Jui-Pin Tseng

2012-04-01

11 citations

DOI PDF S2

Infectious disease surveillance and modelling across geographic frontiers and scientific specialties.

K. Khan , S. McNabb , Z. Memish , R. Eckhardt , Wei Hu , David Kossowsky , J. Sears , Julien Arino , A. Johansson , M. Barbeschi , Brian McCloskey , B. Henry , M. Cetron , J. Brownstein

Lancet. Infectious Diseases (Print) 2012-03-01

114 citations

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A metapopulation model for malaria with transmission-blocking partial immunity in hosts

Julien Arino , A. Ducrot , Pascal Zongo

Journal of Mathematical Biology 2012-02-01

90 citations

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Snapback repellers and homoclinic orbits for multi-dimensional maps

Kang-Ling Liao , Chih-Wen Shih

2012-02-01

14 citations

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Some methodological aspects involved in the study by the Bio.Diaspora Project of the spread of infectious diseases along the global air transportation network

Julien Arino , Wei Hu , K. Khan , David Kossowsky , L. Sanz

2012

14 citations

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Mass gatherings: Infectious disease surveillance and modeling across geographic frontiers and scientific disciplines

K. Khan , S. McNabb , Z. Memish , R. Eckhardt , Wei Hu , David Kossowsky , J. Sears , Julien Arino , A. Johansson , M. Barbeschi , Brian McCloskey , B. Henry , M. Cetron , J. Brownstein

2012

0 citations

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African Journal of Biotechnology Vol

An-Yan Yao , Yu-Yan Yang , Kang-Ling Liao , Lu-Sheng Zhang , Jian-Fang Hu

2012

0 citations

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Multidimensional Dynamics: From Simple to Complicated

Kang-Ling Liao , Chih-Wen Shih , Jui-Pin Tseng

2011-04-26

1 citations

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Effect of media-induced social distancing on disease transmission in a two patch setting

C. Sun , Wei Yang , Julien Arino , K. Khan

Mathematical Biosciences 2011-02-04

254 citations

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Evaluation of vaccination strategies during pandemic outbreaks.

Christopher Bowman , Julien Arino , S. Moghadas

Mathematical biosciences and engineering : MBE 2011

25 citations

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Competitive interference between influenza viral strains

S. Moghadas , Christopher Bowman , Julien Arino

2011

5 citations

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Pandemic influenza: Modelling and public health perspectives.

Julien Arino , C. Bauch , F. Brauer , S. Driedger , A. Greer , S. Moghadas , N. J. Pizzi , B. Sander , A. Tuite , P. van den Driessche , James Watmough , Jian-Hong Wu , P. Yan

Mathematical biosciences and engineering : MBE 2011

35 citations

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Global analysis for a general epidemiological model with vaccination and varying population

Wei Yang , C. Sun , Julien Arino

2010-12-01

74 citations

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Effect of a sharp change of the incidence function on the dynamics of a simple disease

Julien Arino , C. McCluskey

Journal of Biological Dynamics 2010-05-04

18 citations

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Global public health implications of a mass gathering in Mecca, Saudi Arabia during the midst of an influenza pandemic.

K. Khan , Z. Memish , Aneesh Chabbra , J. Liauw , Wei Hu , D. Janes , J. Sears , Julien Arino , Michael Macdonald , Felipe Calderón , Paulo Raposo , C. Heidebrecht , Jun Wang , Angie Chan , J. Brownstein , M. Gardam

Journal of Travel Medicine 2010-03-01

99 citations

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Strategies for the use of oseltamivir and zanamivir during pandemic outbreaks.

E. Hansen , T. Day , Julien Arino , Jianhong Wu , S. Moghadas

The Canadian journal of infectious diseases & medical microbiology = Journal canadien des maladies infectieuses et de la microbiologie medicale 2010

17 citations

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Global Air Traffic Patterns During the H1N1 Influenza Pandemic and their Public Health Implications

Julien Arino

2010-01-01

0 citations

GS

Spread of a novel influenza A (H1N1) virus via global airline transportation.

K. Khan , Julien Arino , Wei Hu , Paulo Raposo , J. Sears , Felipe Calderón , C. Heidebrecht , Michael Macdonald , J. Liauw , Angie Chan , M. Gardam

New England Journal of Medicine 2009-12-16

628 citations

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Editorial

Julien Arino , Stéphanie Portet

Acta Biotheoretica 2009-10-24

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Vimentin intermediate filament formation: in vitro measurement and mathematical modeling of the filament length distribution during assembly.

Stéphanie Portet , Norbert Mücke , R. Kirmse , J. Langowski , M. Beil , H. Herrmann

Langmuir 2009-05-13

83 citations

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Simulating the formation of keratin filament networks by a piecewise-deterministic Markov process.

M. Beil , Sebastian Lǖck , F. Fleischer , Stéphanie Portet , W. Arendt , V. Schmidt

Journal of Theoretical Biology 2009-02-01

31 citations

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Antiviral resistance during pandemic influenza: implications for stockpiling and drug use

Julien Arino , Christopher Bowman , S. Moghadas

BMC Infectious Diseases 2009-01-22

57 citations

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An analysis of Canada's vulnerability to emerging infectious disease threats via the global airline transportation network

K. Khan , Julien Arino , Felipe Calderón , Angie Chan , M. Gardam , C. Heidebrecht , Wei Hu , D. Janes , Michael Macdonald , J. Sears , Paulo Raposo , S. Wang

2009

12 citations

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Proceedings of the Second International Conference of the French-speaking Society for Theoretical Biology (Winnipeg, Manitoba, Canada, 4-6 June, 2007)

Julien Arino , Stéphanie Portet

2009

0 citations

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Diseases in metapopulations

Julien Arino

2009

164 citations

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Vimentin intermediate filament formation: in vitro measurement and mathematical modeling of the filament length distribution during assembly

Stephanie Portet

2009-01-01

83 citations

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Simulating the formation of keratin filament networks by a piecewise-deterministic Markov process

Stephanie Portet

2009-01-01

31 citations

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Propagation of localized bending deformations in microtubules

Stephanie Portet

2009-01-01

3 citations

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An in vivo intermediate filament assembly model.

Stéphanie Portet , Julien Arino

Mathematical biosciences and engineering : MBE 2008-12-01

15 citations

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A model for influenza with vaccination and antiviral treatment.

Julien Arino , F. Brauer , P. van den Driessche , James Watmough , Jian-Hong Wu

Journal of Theoretical Biology 2008-07-07

214 citations

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The logistic map

Julien Arino

2008

0 citations

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Optimal Treatment Rate During an Influenza Pandemic in the Presence of Drug-Resistance Emergence

Julien Arino

2008-01-01

0 citations

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The Laplacian in a stochastic model for spatiotemporal reaction systems

Stephanie Portet

2008-01-01

2 citations

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Propagation of localized bending deformations in microtubules

J. Tuszynski , Stéphanie Portet , J. Dixon , M. Nishino , L. Yu-Lee

2007-12-01

3 citations

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Effect of pathogen-resistant vectors on the transmission dynamics of a vector-borne disease

Julien Arino , Christopher Bowman , A. Gumel , Stéphanie Portet

Journal of Biological Dynamics 2007-10-01

9 citations

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A Quantitative Kinetic Model for the in Vitro Assembly of Intermediate Filaments from Tetrameric Vimentin*

R. Kirmse , Stéphanie Portet , Norbert Mücke , U. Aebi , H. Herrmann , J. Langowski

Journal of Biological Chemistry 2007-06-22

149 citations

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Quarantine in a multi-species epidemic model with spatial dynamics.

Julien Arino , R. Jordan , P. van den Driessche

Mathematical Biosciences 2007-03-01

183 citations

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A final size relation for epidemic models.

Julien Arino , F. Brauer , P. van den Driessche , James Watmough , Jian-Hong Wu

Mathematical biosciences and engineering : MBE 2007-02-01

214 citations

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Delay Differential Equations and Applications: Proceedings of the NATO Advanced Study Institute held in Marrakech, Morocco, 9-21 September 2002

Julien Arino

2007-01-01

367 citations

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A quantitative kinetic model for the in vitro assembly of intermediate filaments from tetrameric vimentin

Stephanie Portet

2007-01-01

149 citations

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An alternative formulation for a delayed logistic equation.

Julien Arino , Lin Wang , G. Wolkowicz

Journal of Theoretical Biology 2006-07-07

172 citations

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Multiple feedback loop design in the tryptophan regulatory network of Escherichia coli suggests a paradigm for robust regulation of processes in series

K. O 'hara , R. Morris , N. Shadbolt , G. Hitch , W. Hall , N. Beagrie , L. Carrivick , S. Rogers , J. Clark , C. Campbell , M. Girolami , C. Cooper , S. Bhartiya , N. Chaudhary , K. Venkatesh , F. Doyle , A. Curtis , M. J. Dalby , N. Gadegaard , J. Williams , E. Taylor , M. F. Salfity , J. M. Huntley , M. J. Graves , O. Marklund , R. Cusack , D. A. Beauregard , A. E. Walsby , D. Holland , N. Rizzo , K. H. Gardner , D. J. Walls , N. M. Keiper-Hrynko , T. S. Ganzke , D. L. Hallahan , Julien Arino , F. Brauer , P. van den Driessche , James Watmough , J. Wu , N. Scrutton , M. Sutcliffe , P. Dutton

Journal of the Royal Society Interface 2006-06-22

23 citations

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Simple models for containment of a pandemic

Julien Arino , F. Brauer , P. van den Driessche , James Watmough , Jian-Hong Wu

Journal of the Royal Society Interface 2006-06-22

232 citations

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Metapopulations epidemic models. A survey

Julien Arino , P. Driessche

2006

23 citations

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Global Travel and Severe Acute Respiratory Syndrome (SARS)

K. Khan , Xia-Min Jiang , Julien Arino

2006

0 citations

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Simple models for containment of a pandemic Supplementary Information

Julien Arino , F. Brauer , P. Driessche , James Watmough , Jianhong Wu

2006

0 citations

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TIME DELAYS IN EPIDEMIC MODELS Modeling and Numerical Considerations

Julien Arino , P. Driessche

2006

92 citations

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Mathematical Biology Biologie Mathématique on Nicholson's Blowflies and Other Models with a Distributed Delay

Julien Arino , Eric P. Braverman

2006

0 citations

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Gravitational Symmetry Breaking Leads to a Polar Liquid Crystal Phase of Microtubules In Vitro

J. Tuszynski , M. Satarić , Stéphanie Portet , J. Dixon

Journal of biological physics (Print) 2005-12-01

5 citations

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Nonlinear assembly kinetics and mechanical properties of biopolymers

J. Tuszynski , Stéphanie Portet , J. Dixon

2005-11-30

13 citations

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Physical interpretation of microtubule self-organization in gravitational fields

J. Tuszynski , M. Satarić , Stéphanie Portet , J. Dixon

2005-06-06

10 citations

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A multi-species epidemic model with spatial dynamics.

Julien Arino , Jonathan R. Davis , D. Hartley , R. Jordan , Joy M. Miller , P. van den Driessche

Mathematical Medicine and Biology-a Journal of The Ima 2005-06-01

231 citations

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Elastic vibrations in seamless microtubules

Stéphanie Portet , J. Tuszynski , C. Hogue , J. Dixon

European Biophysics Journal 2005-05-11

91 citations

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Anisotropic elastic properties of microtubules

J. Tuszynski , Tyler Luchko , Stéphanie Portet , J. Dixon

The European Physical Journal E : Soft matter 2005-04-06

168 citations

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Considerations on yield, nutrient uptake, cellular growth, and competition in chemostat models

Julien Arino , S. Pilyugin , G. Wolkowicz

2005

60 citations

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Disease Spread in Metapopulations

Julien Arino , P. Driessche

2005

195 citations

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Anisotropic elastic properties of microtubules

Stephanie Portet

2005-01-01

168 citations

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Elastic vibrations in seamless microtubules

Stephanie Portet

2005-01-01

91 citations

GS

Nonlinear assembly kinetics and mechanical properties of biopolymers

Stephanie Portet

2005-01-01

13 citations

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Physical interpretation of microtubule self-organization in gravitational fields

Stephanie Portet

2005-01-01

9 citations

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Gravitational Symmetry Breaking Leads to a Polar Liquid Crystal Phase of Microtubules In Vitro

Stephanie Portet

2005-01-01

4 citations

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Intermediate filament networks: in vitro and in vivo assembly models.

Stéphanie Portet , J. Vassy , C. Hogue , Julien Arino , O. Arino

Comptes rendus. Biologies 2004-11-01

8 citations

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Ionic wave propagation along actin filaments.

J. Tuszynski , Stéphanie Portet , J. M. Dixon , C. Luxford , H. Cantiello

Biophysical Journal 2004-04-01

140 citations

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Models of self-organization of microtubules under the influence of gravitational fields

Stéphanie Portet , J. Tuszynski , J. Dixon

2004-03-01

0 citations

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Modeling the static and dynamic elastic properties of microtubules

Stéphanie Portet , J. Tuszynski , J. Dixon

2004-03-01

0 citations

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An epidemiology model that includes a leaky vaccine with a general waning function

Julien Arino , K. Cooke , P. Driessche , J. Velasco-Hernández

2004-02-01

81 citations

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Biological modelling / Biomodélisation Intermediate filament net works: in vitro and in vivo assembly models

Stéphanie Portet , J. Vassy , Julien Arino , O. Arino

2004

0 citations

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Nonhomogeneous asymmetric cellular division in a discrete-time, size-structured model of growth in the chemostat

Julien Arino

2004

0 citations

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Ionic wave propagation along actin filaments

Stephanie Portet

2004-01-01

188 citations

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Models of self-organization of microtubules under the influence of gravitational fields

Stephanie Portet

2004-01-01

0 citations

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Modeling the static and dynamic elastic properties of microtubules

Stephanie Portet

2004-01-01

0 citations

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Weightlessness acts on human breast cancer cell line MCF-7.

J. Vassy , Stéphanie Portet , M. Beil , G. Millot , F. Fauvel-Lafève , G. Gasset , D. Schoevaert

Advances in Space Research 2003-10-01

82 citations

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Models of spatial and orientational self-organization of microtubules under the influence of gravitational fields.

Stéphanie Portet , J. Tuszynski , J. Dixon , M. Satarić

Physical review. E, Statistical, nonlinear, and soft matter physics 2003-08-11

46 citations

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Organization of the cytokeratin network in an epithelial cell.

Stéphanie Portet , O. Arino , J. Vassy , D. Schöevaërt

Journal of Theoretical Biology 2003-08-07

23 citations

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Large amplitude spatial fluctuations in the boundary region of the Bose--Einstein condensate in the Gross--Pitaevskii régime

J. Tuszynski , J. W. Middleton , Stéphanie Portet , J. Dixon , O. Bang , P. Christiansen , M. Salerno

2003-07-15

6 citations

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Global Results for an Epidemic Model with Vaccination that Exhibits Backward Bifurcation

C. McCluskey , Julien Arino , P. Driessche

SIAM Journal on Applied Mathematics 2003

493 citations

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A multi-city epidemic model

Julien Arino , P. van den Driessche

2003-01-01

464 citations

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The Basic Reproduction Number in a Multi-city Compartmental Epidemic Model

Julien Arino , P. Driessche

Multidisciplinary International Symposium on Positive Systems: Theory and Applications 2003

146 citations

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Weightlessness acts on human breast cancer cell line MCF-7

Stephanie Portet

2003-01-01

82 citations

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Models of spatial and orientational self-organization of microtubules under the influence of gravitational fields

Stephanie Portet

2003-01-01

46 citations

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Organization of the cytokeratin network in an epithelial cell

Stephanie Portet

2003-01-01

23 citations

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Large amplitude spatial fluctuations in the boundary region of the Bose–Einstein condensate in the Gross–Pitaevskii régime

Stephanie Portet

2003-01-01

6 citations

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A discrete, size-structured model of phytoplankton growth in the chemostat

Julien Arino , J. Gouzé , A. Sciandra

Journal of Mathematical Biology 2002-10-01

26 citations

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A size-structured, non-conservative ODE model of the chemostat.

Julien Arino , J. Gouzé

Mathematical Biosciences 2002-05-01

6 citations

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phytoplancton en chemostat

Julien Arino

2002

0 citations

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Influence of the gravitational field on microtubule self-organization

Stéphanie Portet , J. Tuszynski

2002

1 citations

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Influence of the gravitational field on microtubule self-organization

Stephanie Portet

2002-01-01

1 citations

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The effect of weightlessness on cytoskeleton architecture and proliferation of human breast cancer cell line MCF-7.

J. Vassy , Stéphanie Portet , M. Beil , G. Millot , F. Fauvel-Lafève , A. Karniguian , G. Gasset , T. Irinopoulou , F. Calvo , J. Rigaut , D. Schoevaert

The FASEB Journal 2001-04-01

169 citations

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Effect of weightlessness on cytoskeleton architecture and proliferation of human breast cancer cell line MCF‐7

J. Vassy , Stéphanie Portet , M. Beil , G. Millot , F. Fauvel-Lafève , A. Karniguian , G. Gasset , T. Irinopoulou , F. Calvo , J. Rigaut , D. Schoevaert

2001-04-01

3 citations

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